Transcript: lnc-RPS23-2:1

Basic information

LNCipedia transcript ID: lnc-RPS23-2:1 
LNCipedia gene ID: lnc-RPS23-2
Ensembl Gene ID: ENSG00000248393
Ensembl Transcript ID: ENST00000512952
Location (hg38): chr5:82545862-82546310
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 449 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512952; ENST00000512952.1; CTD-2015A6.1-001; OTTHUMT00000370364.1; NONHSAT102490; FPKM1_group_25692_transcript_1
Alternative gene names: ENSG00000248393; CTD-2015A6.1; ENSG00000248393.1; OTTHUMG00000162772.1; AC026782.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -384.5927 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS23-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS23-1:1
3.1 lnc-RPS23-2:1
4.0 lnc-RPS23-2:1
4.1 lnc-RPS23-2:1
5.0 lnc-RPS23-2:1
5.1 lnc-ANKRD34B-40:1
5.2 lnc-RPS23-2:1