Transcript: lnc-RPS24-4:1

Basic information

LNCipedia transcript ID: lnc-RPS24-4:1 
LNCipedia gene ID: lnc-RPS24-4
Ensembl Gene ID: ENSG00000229543
Ensembl Transcript ID: ENST00000434440
Location (hg38): chr10:78293842-78301003
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 520 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434440; ENST00000434440.1; RP11-90J7.2-001; OTTHUMT00000048932.1; NONHSAT015069
Alternative gene names: ENSG00000229543; RP11-90J7.2; ENSG00000229543.1; OTTHUMG00000018553.1; AC010163.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.8426 non-coding 
CPAT coding probability 4.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS24-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS24-3:1
3.1 lnc-RPS24-4:1
4.0 lnc-RPS24-4:1
4.1 lnc-RPS24-4:1
5.0 lnc-RPS24-4:1
5.1 lnc-MTRNR2L5-232:1
5.2 lnc-RPS24-4:1