Transcript: lnc-SAP30-21:1

Basic information

LNCipedia transcript ID: lnc-SAP30-21:1 
LNCipedia gene ID: lnc-SAP30-21
Location (hg38): chr4:173517390-173518701
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 309 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008935; NONHSAT099256
Alternative gene names: XLOC_003783; linc-KIAA1712-4; DEIN; NBLA00301; FLJ11539


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 7.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAP30-21:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SAP30-3:1
3.1 lnc-SAP30-3:1
4.0 lnc-SAP30-3:1
4.1 HAND2-AS1:46
5.0 HAND2-AS1:46
5.1 lnc-GALNTL6-56:1
5.2 lnc-SAP30-21:1