Transcript: lnc-SELENOP-1:4

Basic information

LNCipedia transcript ID: lnc-SELENOP-1:4 
LNCipedia gene ID: lnc-SELENOP-1
Location (hg38): chr5:42918364-42920024
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 337 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010319; NONHSAT101236
Alternative gene names: XLOC_004802; linc-SEPP1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.6164 non-coding 
CPAT coding probability 12.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SELENOP-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEPP1-1:1
3.1 lnc-SEPP1-1:1
4.0 lnc-SEPP1-1:1
4.1 lnc-SEPP1-1:1
5.0 lnc-SEPP1-1:1
5.1 lnc-SELENOP-1:1
5.2 lnc-SELENOP-1:4