Transcript: lnc-SEPT7-1:4

Basic information

LNCipedia transcript ID: lnc-SEPT7-1:4 
LNCipedia gene ID: lnc-SEPT7-1
Ensembl Gene ID: ENSG00000227544
Ensembl Transcript ID: ENST00000449644
Location (hg38): chr7:35716474-35734887
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1651 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012875; ENST00000449644; ENST00000449644.1; AC018647.3-001; OTTHUMT00000338270.1; NONHSAT120092; ENST00000449644.5
Alternative gene names: XLOC_006043; linc-SEPT7-1; ENSG00000227544; AC018647.3; ENSG00000227544.1; OTTHUMG00000155058.1; ENSG00000227544.4; ENSG00000227544.8; AC018647.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.4354 non-coding 
CPAT coding probability 4.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEPT7-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SEPT7-1:4
3.1 lnc-SEPT7-1:4
4.0 lnc-SEPT7-1:4
4.1 lnc-SEPT7-1:4
5.0 lnc-SEPT7-1:4
5.1 lnc-CCDC129-44:12
5.2 lnc-SEPT7-1:4