Transcript: lnc-SERPINI1-6:1

Basic information

LNCipedia transcript ID: lnc-SERPINI1-6:1 
LNCipedia gene ID: lnc-SERPINI1-6
Ensembl Gene ID: ENSG00000241882
Ensembl Transcript ID: ENST00000496247
Location (hg38): chr3:168288553-168291228
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000496247.1; RP11-637O11.2-001; OTTHUMT00000351306.1; NONHSAT093129
Alternative gene names: ENSG00000241882.1; RP11-637O11.2; OTTHUMG00000158562.1; AC124893.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.2186 non-coding 
CPAT coding probability 5.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SERPINI1-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERPINI1-6:1
4.0 lnc-SERPINI1-6:1
4.1 lnc-SERPINI1-6:1
5.0 lnc-SERPINI1-6:1
5.1 lnc-LRRIQ4-32:1
5.2 lnc-SERPINI1-6:1