Transcript: lnc-SERTAD2-3:5

Basic information

LNCipedia transcript ID: lnc-SERTAD2-3:5 
LNCipedia gene ID: lnc-SERTAD2-3
RefSeq ID: NR_036586
Location (hg38): chr2:64901840-64932447
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3029 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT071139; NR_036586; NR_036586.1
Alternative gene names: LOC400958


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.0218 non-coding 
CPAT coding probability 42.94% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SERTAD2-3:5 no no no no

Available literature

  1. Martini (2017), lncRNAs as Novel Indicators of Patients' Prognosis in Stage I Epithelial Ovarian Cancer: A Retrospective and Multicentric Study., Clin. Cancer Res.
  2. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAB1A-3:4
4.0 lnc-SERTAD2-3:5
4.1 lnc-SERTAD2-3:5
5.0 lnc-SERTAD2-3:5
5.1 lnc-GKN2-95:4
5.2 lnc-SERTAD2-3:5