Transcript: lnc-SETD6-1:2

Basic information

LNCipedia transcript ID: lnc-SETD6-1:2 
LNCipedia gene ID: lnc-SETD6-1
Ensembl Gene ID: ENSG00000245768
Ensembl Transcript ID: ENST00000500117
Location (hg38): chr16:58749638-59108974
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2296 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500117; ENST00000500117.1; RP11-410D17.2-001; OTTHUMT00000422091.1; NONHSAT142875
Alternative gene names: ENSG00000245768; AC092378.1; ENSG00000245768.2; RP11-410D17.2; OTTHUMG00000173082.2; ENSG00000245768.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.7675 non-coding 
CPAT coding probability 9.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SETD6-1:2 no no no no

Available literature

  1. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SETD6-1:1
3.1 lnc-SETD6-1:2
4.0 lnc-SETD6-1:2
4.1 lnc-SETD6-1:2
5.0 lnc-SETD6-1:2
5.1 lnc-ADGRG1-61:2
5.2 lnc-SETD6-1:2