Transcript: lnc-SETD6-1:3

Basic information

LNCipedia transcript ID: lnc-SETD6-1:3 
LNCipedia gene ID: lnc-SETD6-1
Ensembl Gene ID: ENSG00000245768
Ensembl Transcript ID: ENST00000565722
Location (hg38): chr16:58749677-58862081
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 484 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565722.1; RP11-410D17.2-003; OTTHUMT00000422092.1; NONHSAT142876
Alternative gene names: ENSG00000245768.2; RP11-410D17.2; OTTHUMG00000173082.2; ENSG00000245768.6; AC092378.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.7675 non-coding 
CPAT coding probability 11.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SETD6-1:3 no no no no

Available literature

  1. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SETD6-1:3
4.0 lnc-SETD6-1:3
4.1 lnc-SETD6-1:3
5.0 lnc-SETD6-1:3
5.1 lnc-ADGRG1-61:3
5.2 lnc-SETD6-1:3