Transcript: lnc-SETD6-5:1

Basic information

LNCipedia transcript ID: lnc-SETD6-5:1 
LNCipedia gene ID: lnc-SETD6-5
Location (hg38): chr16:61129117-61152058
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 648 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024428; NONHSAT142913
Alternative gene names: XLOC_011745; linc-CDH5-10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.0798 non-coding 
CPAT coding probability 21.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SETD6-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SETD6-4:1
3.1 lnc-SETD6-5:1
4.0 lnc-SETD6-5:1
4.1 lnc-SETD6-5:1
5.0 lnc-SETD6-5:1
5.1 lnc-ADGRG1-84:2
5.2 lnc-SETD6-5:1