Transcript: lnc-SGCG-5:2

Basic information

LNCipedia transcript ID: lnc-SGCG-5:2 
LNCipedia gene ID: lnc-SGCG-5
Location (hg38): chr13:22926563-22934948
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1765 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021721; NONHSAT032440
Alternative gene names: XLOC_010305; linc-SGCG-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 39.2101 non-coding 
CPAT coding probability 90.07% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SGCG-5:2 no no no no

Available literature

  1. Zeng (2016), Analysis of lncRNAs expression in UVB-induced stress responses of melanocytes., J. Dermatol. Sci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SGCG-5:2
3.1 lnc-SGCG-5:2
4.0 lnc-SGCG-5:2
4.1 lnc-SGCG-5:2
5.0 lnc-SGCG-5:2
5.1 lnc-GTF3A-92:2
5.2 lnc-SGCG-5:2