Transcript: lnc-SH3BGRL2-2:3

Basic information

LNCipedia transcript ID: lnc-SH3BGRL2-2:3 
LNCipedia gene ID: lnc-SH3BGRL2-2
Location (hg38): chr6:79420232-79421427
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 658 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT113690
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.7651 non-coding 
CPAT coding probability 21.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3BGRL2-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SH3BGRL2-2:3
4.0 lnc-SH3BGRL2-2:3
4.1 lnc-SH3BGRL2-2:3
5.0 lnc-SH3BGRL2-2:3
5.1 lnc-CYB5R4-45:5
5.2 lnc-SH3BGRL2-2:3