Transcript: lnc-SHANK2-9:1

Basic information

LNCipedia transcript ID: lnc-SHANK2-9:1 
LNCipedia gene ID: lnc-SHANK2-9
Location (hg38): chr11:70269192-70270500
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1309 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA270:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.1649 non-coding 
CPAT coding probability 47.74% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SHANK2-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SHANK2-9:1
4.1 lnc-SHANK2-9:1
5.0 lnc-SHANK2-9:1
5.1 lnc-KMT5B-35:1
5.2 lnc-SHANK2-9:1