Transcript: lnc-SHE-1:1

Basic information

LNCipedia transcript ID: lnc-SHE-1:1 
LNCipedia gene ID: lnc-SHE-1
Location (hg38): chr1:154469637-154473115
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1538 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002485; NONHSAT006618
Alternative gene names: XLOC_001035; linc-C1orf43-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.4441 non-coding 
CPAT coding probability 18.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHE-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHE-1:1
3.1 lnc-SHE-1:1
4.0 lnc-SHE-1:1
4.1 lnc-SHE-1:1
5.0 lnc-SHE-1:1
5.1 lnc-UBE2Q1-5:1
5.2 lnc-SHE-1:1