Transcript: lnc-SLC30A9-24:2

Basic information

LNCipedia transcript ID: lnc-SLC30A9-24:2 
LNCipedia gene ID: lnc-SLC30A9-24
Location (hg38): chr4:42238705-42251239
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 513 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00008058
Alternative gene names: XLOC_003523; linc-SHISA3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -228.943 non-coding 
CPAT coding probability 13.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC30A9-24:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHISA3-1:1
3.1 lnc-SHISA3-1:1
4.0 lnc-SHISA3-1:1
4.1 lnc-SHISA3-1:1
5.0 lnc-SHISA3-1:1
5.1 lnc-GABRB1-24:2
5.2 lnc-SLC30A9-24:2