Transcript: lnc-SHPRH-1:1

Basic information

LNCipedia transcript ID: lnc-SHPRH-1:1 
LNCipedia gene ID: lnc-SHPRH-1
Location (hg38): chr6:146595958-146598931
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 748 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00011582; ENST00000419168; ENST00000419168.1; RP11-715G15.1-001; OTTHUMT00000042580.1
Alternative gene names: XLOC_005866; linc-SHPRH-9; ENSG00000237468; RP11-715G15.1; ENSG00000237468.1; OTTHUMG00000015756.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.3413 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHPRH-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHPRH-1:1
3.1 lnc-SHPRH-1:1
4.0 lnc-SHPRH-1:1
4.1 lnc-SHPRH-1:1
5.0 lnc-SHPRH-1:1
5.1 lnc-RAET1G-42:2
5.2 lnc-SHPRH-1:1