Transcript: LINC01744:8

Basic information

LNCipedia transcript ID: LINC01744:8 
HGNC Gene Symbol: LINC01744    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1744
Ensembl Gene ID: ENSG00000236497
Ensembl Transcript ID: ENST00000457698
RefSeq ID: NR_110683
Location (hg38): chr1:232727254-232742715
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2042 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000762; ENST00000457698; ENST00000457698.1; RP11-66A2.2-001; OTTHUMT00000092334.1; NONHSAT010225; NR_110683; NR_110683.1
Alternative gene names: XLOC_001259; linc-SIPA1L2; ENSG00000236497; RP11-66A2.2; ENSG00000236497.1; OTTHUMG00000037825.1; LINC01744; LOC101927683


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.2063 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01744:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIPA1L2-1:2
3.1 lnc-SIPA1L2-1:2
4.0 lnc-SIPA1L2-1:2
4.1 lnc-SIPA1L2-1:2
5.0 lnc-SIPA1L2-1:2
5.1 LINC01744:3
5.2 LINC01744:8