Transcript: lnc-SIPA1L3-6:8

Basic information

LNCipedia transcript ID: lnc-SIPA1L3-6:8 
LNCipedia gene ID: lnc-SIPA1L3-6
RefSeq ID: NR_040013
Location (hg38): chr19:37817411-37826638
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1058 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT066165; NR_040013; ENST00000590433.1; ENST00000590433.5; NR_040013.1
Alternative gene names: ENSG00000267640.1; CTD-2554C21.2; ENSG00000267640.5; LOC644554


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.2286 non-coding 
CPAT coding probability 7.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIPA1L3-6:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIPA1L3-3:3
4.0 lnc-SIPA1L3-3:3
4.1 lnc-SIPA1L3-3:3
5.0 lnc-SIPA1L3-3:3
5.1 lnc-ZNF540-10:8
5.2 lnc-SIPA1L3-6:8