Transcript: lnc-SIPA1L3-6:16

Basic information

LNCipedia transcript ID: lnc-SIPA1L3-6:16 
LNCipedia gene ID: lnc-SIPA1L3-6
Location (hg38): chr19:37817926-37826211
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT066167; ENST00000587248.1; ENST00000587248.5
Alternative gene names: ENSG00000267640.1; CTD-2554C21.2; ENSG00000267640.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.0082 non-coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIPA1L3-6:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIPA1L3-3:5
4.0 lnc-SIPA1L3-3:5
4.1 lnc-SIPA1L3-3:5
5.0 lnc-SIPA1L3-3:5
5.1 lnc-ZNF540-10:16
5.2 lnc-SIPA1L3-6:16