Transcript: lnc-SLC17A5-1:2

Basic information

LNCipedia transcript ID: lnc-SLC17A5-1:2 
LNCipedia gene ID: lnc-SLC17A5-1
Ensembl Gene ID: ENSG00000231652
Ensembl Transcript ID: ENST00000428865
RefSeq ID: NR_110889
Location (hg38): chr6:73693903-73696131
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1973 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000428865.2; NR_110889; NR_110889.1
Alternative gene names: ENSG00000231652.2; RP11-553A21.3; AL590428.1; LOC101928489


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5806 non-coding 
CPAT coding probability 1.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC17A5-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC17A5-1:2
4.0 lnc-SLC17A5-1:2
4.1 lnc-SLC17A5-1:2
5.0 lnc-SLC17A5-1:2
5.1 lnc-CEP162-68:3
5.2 lnc-SLC17A5-1:2

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