Transcript: lnc-SLC1A1-10:1

Basic information

LNCipedia transcript ID: lnc-SLC1A1-10:1 
LNCipedia gene ID: lnc-SLC1A1-10
Location (hg38): chr9:4436349-4436658
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 310 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT130055; FPKM1_group_32622_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.0129 non-coding 
CPAT coding probability 3.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC1A1-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC1A1-10:1
4.0 lnc-SLC1A1-10:1
4.1 lnc-SLC1A1-10:1
5.0 lnc-SLC1A1-10:1
5.1 lnc-RECK-277:1
5.2 lnc-SLC1A1-10:1