Transcript: lnc-SLC34A2-2:1

Basic information

LNCipedia transcript ID: lnc-SLC34A2-2:1 
LNCipedia gene ID: lnc-SLC34A2-2
Location (hg38): chr4:25679889-25713329
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1558 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_2617_chr4:25681510-25714951_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.3741 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC34A2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC34A2-2:1
4.0 lnc-SLC34A2-2:1
4.1 lnc-SLC34A2-2:1
5.0 lnc-SLC34A2-2:1
5.1 lnc-USP17L28-108:1
5.2 lnc-SLC34A2-2:1

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