Transcript: lnc-SLC38A2-1:4

Basic information

LNCipedia transcript ID: lnc-SLC38A2-1:4 
LNCipedia gene ID: lnc-SLC38A2-1
Location (hg38): chr12:46380060-46494452
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1401 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020768; NONHSAT027863
Alternative gene names: XLOC_010061; linc-SLC38A2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.7203 non-coding 
CPAT coding probability 17.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC38A2-1:3
3.1 lnc-SLC38A2-1:4
4.0 lnc-SLC38A2-1:4
4.1 lnc-SLC38A2-1:4
5.0 lnc-SLC38A2-1:4
5.1 lnc-RPAP3-13:13
5.2 lnc-SLC38A2-1:4