Transcript: lnc-SLC44A3-1:4

Basic information

LNCipedia transcript ID: lnc-SLC44A3-1:4 
LNCipedia gene ID: lnc-SLC44A3-1
Location (hg38): chr1:94927411-94963602
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1730 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001040; NONHSAT004626
Alternative gene names: XLOC_000304; linc-TMEM56-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.5088 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC44A3-1:4 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC44A3-1:4
3.1 lnc-SLC44A3-1:4
4.0 lnc-SLC44A3-1:4
4.1 lnc-SLC44A3-1:4
5.0 lnc-SLC44A3-1:4
5.1 lnc-BTBD8-39:14
5.2 lnc-SLC44A3-1:4