Transcript: lnc-SLC6A9-2:3

Basic information

LNCipedia transcript ID: lnc-SLC6A9-2:3 
LNCipedia gene ID: lnc-SLC6A9-2
Ensembl Gene ID: ENSG00000237950
Ensembl Transcript ID: ENST00000445226
Location (hg38): chr1:43944372-43946286
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 294 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000511; ENST00000445226.1; RP11-7O11.3-003; OTTHUMT00000020712.1; NONHSAT002830
Alternative gene names: XLOC_000812; linc-HYI-2; ENSG00000237950.1; RP11-7O11.3; OTTHUMG00000007704.1; AL357079.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.2905 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A9-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC6A9-2:3
3.1 lnc-SLC6A9-2:3
4.0 lnc-SLC6A9-2:3
4.1 lnc-SLC6A9-2:3
5.0 lnc-SLC6A9-2:3
5.1 lnc-C1orf210-9:12
5.2 lnc-SLC6A9-2:3