Transcript: lnc-SLCO4A1-4:1

Basic information

LNCipedia transcript ID: lnc-SLCO4A1-4:1 
LNCipedia gene ID: lnc-SLCO4A1-4
Location (hg38): chr20:62724423-62732056
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 7634 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: refGeneNc_2236_NR_024389
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.7312 non-coding 
CPAT coding probability 66.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLCO4A1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLCO4A1-2:1
4.0 lnc-SLCO4A1-4:1
4.1 lnc-SLCO4A1-4:1
5.0 lnc-SLCO4A1-4:1
5.1 lnc-GNAS-49:1
5.2 lnc-SLCO4A1-4:1