Transcript: lnc-SLCO5A1-4:1

Basic information

LNCipedia transcript ID: lnc-SLCO5A1-4:1 
LNCipedia gene ID: lnc-SLCO5A1-4
Ensembl Gene ID: ENSG00000253373
Ensembl Transcript ID: ENST00000520780
Location (hg38): chr8:69175579-69178189
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 453 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520780; ENST00000520780.1; RP11-21C17.1-001; OTTHUMT00000378879.1; NONHSAT127114
Alternative gene names: ENSG00000253373; RP11-21C17.1; ENSG00000253373.1; OTTHUMG00000164463.1; AC021785.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.9118 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLCO5A1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLCO5A1-3:1
3.1 lnc-SLCO5A1-4:1
4.0 lnc-SLCO5A1-4:1
4.1 lnc-SLCO5A1-4:1
5.0 lnc-SLCO5A1-4:1
5.1 lnc-CPA6-26:1
5.2 lnc-SLCO5A1-4:1