Transcript: lnc-VLDLR-7:1

Basic information

LNCipedia transcript ID: lnc-VLDLR-7:1 
LNCipedia gene ID: lnc-VLDLR-7
Location (hg38): chr9:2001764-2002409
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 636 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT129982; FPKM1_group_32576_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.8041 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VLDLR-7:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMARCA2-4:1
4.0 lnc-SMARCA2-4:1
4.1 lnc-SMARCA2-4:1
5.0 lnc-SMARCA2-4:1
5.1 lnc-RECK-297:1
5.2 lnc-VLDLR-7:1