Transcript: lnc-SMYD3-5:1

Basic information

LNCipedia transcript ID: lnc-SMYD3-5:1 
LNCipedia gene ID: lnc-SMYD3-5
Location (hg38): chr1:245591302-245593375
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1638 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT010687
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.7725 non-coding 
CPAT coding probability 8.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMYD3-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMYD3-5:1
4.0 lnc-SMYD3-5:1
4.1 lnc-SMYD3-5:1
5.0 lnc-SMYD3-5:1
5.1 lnc-LYPD8-37:1
5.2 lnc-SMYD3-5:1