Transcript: lnc-SOCS6-13:1

Basic information

LNCipedia transcript ID: lnc-SOCS6-13:1 
LNCipedia gene ID: lnc-SOCS6-13
Location (hg38): chr18:71475920-71500857
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1165 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002llc_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.7556 non-coding 
CPAT coding probability 5.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOCS6-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOCS6-13:1
4.0 lnc-SOCS6-13:1
4.1 lnc-SOCS6-13:1
5.0 lnc-SOCS6-13:1
5.1 lnc-KCNG2-84:1
5.2 lnc-SOCS6-13:1