Transcript: lnc-SOS1-1:2

Basic information

LNCipedia transcript ID: lnc-SOS1-1:2 
LNCipedia gene ID: lnc-SOS1-1
Ensembl Gene ID: ENSG00000269210
Ensembl Transcript ID: ENST00000601251
Location (hg38): chr2:38959287-38960342
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1056 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000601251.2
Alternative gene names: ENSG00000269210.2; RP11-173C1.1; AC019171.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 208.7283 coding 
CPAT coding probability 2.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SOS1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SOS1-1:2
4.1 lnc-SOS1-1:2
5.0 lnc-SOS1-1:2
5.1 lnc-MAP4K3-10:3
5.2 lnc-SOS1-1:2