Transcript: lnc-SOX3-2:1

Basic information

LNCipedia transcript ID: lnc-SOX3-2:1 
LNCipedia gene ID: lnc-SOX3-2
Location (hg38): chrX:140470866-140471274
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 409 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT138796
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.8947 non-coding 
CPAT coding probability 37.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SOX3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX3-2:1
4.0 lnc-SOX3-2:1
4.1 lnc-SOX3-2:1
5.0 lnc-SOX3-2:1
5.1 lnc-ETDB-47:1
5.2 lnc-SOX3-2:1