Transcript: lnc-SPAG1-4:1

Basic information

LNCipedia transcript ID: lnc-SPAG1-4:1 
LNCipedia gene ID: lnc-SPAG1-4
Ensembl Gene ID: ENSG00000253740
Ensembl Transcript ID: ENST00000521625
Location (hg38): chr8:100618581-100619993
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 449 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521625.1; KB-1083B1.1-001; OTTHUMT00000380212.1; ENST00000521625.5
Alternative gene names: ENSG00000253740.1; KB-1083B1.1; OTTHUMG00000164778.1; ENSG00000253740.5; AP001205.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -264.9569 non-coding 
CPAT coding probability 3.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPAG1-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPAG1-4:1
4.0 lnc-SPAG1-4:1
4.1 lnc-SPAG1-4:1
5.0 lnc-SPAG1-4:1
5.1 lnc-CA2-164:3
5.2 lnc-SPAG1-4:1