Transcript: lnc-SPATA7-4:1

Basic information

LNCipedia transcript ID: lnc-SPATA7-4:1 
LNCipedia gene ID: lnc-SPATA7-4
Ensembl Gene ID: ENSG00000278576
Ensembl Transcript ID: ENST00000617439
Location (hg38): chr14:88589231-88592408
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3178 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT039159; ENST00000617439.1
Alternative gene names: ENSG00000278576.1; RP11-507K2.6; AL162171.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5136 non-coding 
CPAT coding probability 2.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA7-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPATA7-4:1
4.0 lnc-SPATA7-4:1
4.1 lnc-SPATA7-4:1
5.0 lnc-SPATA7-4:1
5.1 lnc-SPATA7-4:1
5.2 lnc-SPATA7-4:1