Transcript: lnc-SSTR4-1:2

Basic information

LNCipedia transcript ID: lnc-SSTR4-1:2 
LNCipedia gene ID: lnc-SSTR4-1
Location (hg38): chr20:23038223-23039236
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 386 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000419734.1; RP4-753D10.3-002; OTTHUMT00000078305.1; NONHSAT079027
Alternative gene names: ENSG00000234646.1; RP4-753D10.3; OTTHUMG00000032051.1; ENSG00000234646.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.9437 non-coding 
CPAT coding probability 7.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SSTR4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SSTR4-1:2
4.0 lnc-SSTR4-1:2
4.1 lnc-SSTR4-1:2
5.0 lnc-SSTR4-1:2
5.1 lnc-CST8-16:5
5.2 lnc-SSTR4-1:2