Transcript: EPHA5-AS1:13

Basic information

LNCipedia transcript ID: EPHA5-AS1:13 
LNCipedia gene ID: EPHA5-AS1
Ensembl Gene ID: ENSG00000248479
Ensembl Transcript ID: ENST00000503625
Location (hg38): chr4:65702202-65705553
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 385 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007545; ENST00000503625; ENST00000503625.1; RP11-807H7.2-001; OTTHUMT00000361854.1; NONHSAT096668
Alternative gene names: XLOC_003559; linc-STAP1-5; ENSG00000248479; RP11-807H7.2; ENSG00000248479.1; OTTHUMG00000160709.1; ; AC104137.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.1335 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
EPHA5-AS1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAP1-5:1
3.1 lnc-STAP1-5:1
4.0 lnc-STAP1-5:1
4.1 EPHA5-AS1:13
5.0 EPHA5-AS1:13
5.1 EPHA5-AS1:13
5.2 EPHA5-AS1:13

loading