Transcript: lnc-LRSAM1-3:2

Basic information

LNCipedia transcript ID: lnc-LRSAM1-3:2 
LNCipedia gene ID: lnc-LRSAM1-3
Location (hg38): chr9:127580337-127580819
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 351 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00016159
Alternative gene names: XLOC_007570; linc-STXBP1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.5916 non-coding 
CPAT coding probability 1.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRSAM1-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STXBP1-2:1
3.1 lnc-STXBP1-2:1
4.0 lnc-STXBP1-2:1
4.1 lnc-STXBP1-2:1
5.0 lnc-STXBP1-2:1
5.1 lnc-PTPA-97:2
5.2 lnc-LRSAM1-3:2