Transcript: lnc-SV2B-1:2

Basic information

LNCipedia transcript ID: lnc-SV2B-1:2 
LNCipedia gene ID: lnc-SV2B-1
Ensembl Gene ID: ENSG00000258551
Ensembl Transcript ID: ENST00000554333
Location (hg38): chr15:91463337-91494850
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2140 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554333; ENST00000554333.1; RP11-661P17.1-001; OTTHUMT00000414799.1; NONHSAT048501
Alternative gene names: ENSG00000258551; RP11-661P17.1; ENSG00000258551.1; OTTHUMG00000171693.1; ENSG00000258551.5; CRAT37; AC104035.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.9431 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SV2B-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SV2B-1:2
3.1 lnc-SV2B-1:2
4.0 lnc-SV2B-1:2
4.1 lnc-SV2B-1:2
5.0 lnc-SV2B-1:2
5.1 lnc-TTLL13P-47:5
5.2 lnc-SV2B-1:2