Transcript: lnc-SYNDIG1-4:1

Basic information

LNCipedia transcript ID: lnc-SYNDIG1-4:1 
LNCipedia gene ID: lnc-SYNDIG1-4
Location (hg38): chr20:24023336-24031312
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2005 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028137; NONHSAT079095
Alternative gene names: XLOC_013495; linc-TMEM90B-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.3487 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYNDIG1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYNDIG1-4:1
3.1 lnc-SYNDIG1-4:1
4.0 lnc-SYNDIG1-4:1
4.1 lnc-SYNDIG1-4:1
5.0 lnc-SYNDIG1-4:1
5.1 lnc-CST8-19:1
5.2 lnc-SYNDIG1-4:1