Transcript: lnc-TAPBPL-3:1

Basic information

LNCipedia transcript ID: lnc-TAPBPL-3:1 
LNCipedia gene ID: lnc-TAPBPL-3
Ensembl Gene ID: ENSG00000276718
Ensembl Transcript ID: ENST00000619166
Location (hg38): chr12:6466537-6467135
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 599 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000619166.1
Alternative gene names: ENSG00000276718.1; RP1-102E24.10; AC005840.5; AC005840.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.6201 non-coding 
CPAT coding probability 8.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAPBPL-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TAPBPL-3:1
4.1 lnc-TAPBPL-3:1
5.0 lnc-TAPBPL-3:1
5.1 lnc-CLEC4D-68:1
5.2 lnc-TAPBPL-3:1