Transcript: lnc-TNS2-1:2

Basic information

LNCipedia transcript ID: lnc-TNS2-1:2 
LNCipedia gene ID: lnc-TNS2-1
Ensembl Gene ID: ENSG00000257475
Ensembl Transcript ID: ENST00000435621
Location (hg38): chr12:53012104-53013921
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 536 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435621.3; RP11-983P16.2-001; OTTHUMT00000405576.1; NONHSAT028391
Alternative gene names: ENSG00000257475.1; RP11-983P16.2; OTTHUMG00000169714.2; ENSG00000257475.2; AC068888.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.1268 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNS2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TENC1-1:2
4.0 lnc-TENC1-1:2
4.1 lnc-TENC1-1:2
5.0 lnc-TENC1-1:2
5.1 lnc-SP1-15:2
5.2 lnc-TNS2-1:2