Transcript: lnc-TFEC-4:1

Basic information

LNCipedia transcript ID: lnc-TFEC-4:1 
LNCipedia gene ID: lnc-TFEC-4
Ensembl Gene ID: ENSG00000242072
Ensembl Transcript ID: ENST00000471672
Location (hg38): chr7:115647461-115676329
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 737 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013230; ENST00000471672; ENST00000471672.1; RP11-458K10.1-001; OTTHUMT00000351054.1; NONHSAT122850
Alternative gene names: XLOC_006567; linc-PPP1R3A-1; ENSG00000242072; RP11-458K10.1; ENSG00000242072.1; OTTHUMG00000158448.1; AC092590.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.0721 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TFEC-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TFEC-3:1
3.1 lnc-TFEC-4:1
4.0 lnc-TFEC-4:1
4.1 lnc-TFEC-4:1
5.0 lnc-TFEC-4:1
5.1 lnc-TFEC-4:1
5.2 lnc-TFEC-4:1