Transcript: lnc-TGFBI-1:1

Basic information

LNCipedia transcript ID: lnc-TGFBI-1:1 
LNCipedia gene ID: lnc-TGFBI-1
Location (hg38): chr5:136186875-136188693
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 591 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010102; NONHSAT103954
Alternative gene names: XLOC_004566; linc-MYOT-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.8625 non-coding 
CPAT coding probability 3.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBI-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TGFBI-1:1
3.1 lnc-TGFBI-1:1
4.0 lnc-TGFBI-1:1
4.1 lnc-TGFBI-1:1
5.0 lnc-TGFBI-1:1
5.1 lnc-PDLIM4-92:1
5.2 lnc-TGFBI-1:1