Transcript: lnc-TLE3-6:9

Basic information

LNCipedia transcript ID: lnc-TLE3-6:9 
LNCipedia gene ID: lnc-TLE3-6
Ensembl Gene ID: ENSG00000259215
Ensembl Transcript ID: ENST00000558702
Location (hg38): chr15:69458522-69461806
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 391 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558702.1; RP11-253M7.4-001; OTTHUMT00000416796.1; NONHSAT046951
Alternative gene names: ENSG00000259215.1; RP11-253M7.4; OTTHUMG00000172088.1; AC027237.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.3573 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TLE3-6:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TLE3-7:1
4.0 lnc-TLE3-7:1
4.1 lnc-TLE3-6:9
5.0 lnc-TLE3-6:9
5.1 lnc-CLN6-13:9
5.2 lnc-TLE3-6:9