Transcript: LINC02350:19

Basic information

LNCipedia transcript ID: LINC02350:19 
LNCipedia gene ID: LINC02350
Location (hg38): chr12:126358034-126358896
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 775 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000539588; ENST00000539588.1; RP4-809F18.2-001; OTTHUMT00000399841.1; NONHSAT031771
Alternative gene names: ENSG00000257061; RP4-809F18.2; ENSG00000257061.1; OTTHUMG00000168465.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.6775 non-coding 
CPAT coding probability 1.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02350:19 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM132B-6:1
3.1 lnc-TMEM132B-6:1
4.0 lnc-TMEM132B-6:1
4.1 lnc-TMEM132B-6:1
5.0 lnc-TMEM132B-6:1
5.1 LINC02350:11
5.2 LINC02350:19