Transcript: LINC02350:20

Basic information

LNCipedia transcript ID: LINC02350:20 
LNCipedia gene ID: LINC02350
Ensembl Gene ID: ENSG00000255595
Ensembl Transcript ID: ENST00000536639
Location (hg38): chr12:126359302-126361065
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1310 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536639; ENST00000536639.1; RP4-809F18.1-001; OTTHUMT00000399842.1; NONHSAT031772
Alternative gene names: ENSG00000255595; RP4-809F18.1; ENSG00000255595.1; OTTHUMG00000168466.1; ENSG00000255595.3; AC007368.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.2003 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02350:20 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM132B-7:1
3.1 lnc-TMEM132B-7:1
4.0 lnc-TMEM132B-7:1
4.1 lnc-TMEM132B-7:1
5.0 lnc-TMEM132B-7:1
5.1 LINC02350:12
5.2 LINC02350:20