Transcript: lnc-TMEM206-5:11

Basic information

LNCipedia transcript ID: lnc-TMEM206-5:11 
LNCipedia gene ID: lnc-TMEM206-5
RefSeq ID: NR_125984
Location (hg38): chr1:212225278-212285021
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 406 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125984; NR_125984.1
Alternative gene names: LOC101929541


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -178.6359 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM206-5:11 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM206-5:11
4.0 lnc-TMEM206-5:11
4.1 lnc-TMEM206-5:11
5.0 lnc-TMEM206-5:11
5.1 lnc-IRF6-44:5
5.2 lnc-TMEM206-5:11