Transcript: lnc-TMEM206-5:8

Basic information

LNCipedia transcript ID: lnc-TMEM206-5:8 
LNCipedia gene ID: lnc-TMEM206-5
Ensembl Gene ID: ENSG00000226251
Ensembl Transcript ID: ENST00000412221
Location (hg38): chr1:212225280-212226538
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 337 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000725; ENST00000412221; ENST00000412221.1; RP11-15I11.3-002; OTTHUMT00000090180.1; NONHSAT009356; ENST00000412221.5
Alternative gene names: XLOC_001191; linc-INTS7; ENSG00000226251; RP11-15I11.3; ENSG00000226251.1; OTTHUMG00000037132.1; ENSG00000226251.5; AL451060.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -178.6359 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM206-5:8 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM206-4:8
3.1 lnc-TMEM206-5:8
4.0 lnc-TMEM206-5:8
4.1 lnc-TMEM206-5:8
5.0 lnc-TMEM206-5:8
5.1 lnc-IRF6-44:18
5.2 lnc-TMEM206-5:8