Transcript: lnc-SARAF-3:1

Basic information

LNCipedia transcript ID: lnc-SARAF-3:1 
LNCipedia gene ID: lnc-SARAF-3
Location (hg38): chr8:29777178-29804028
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1399 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_3571_NR_026765
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.0587 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SARAF-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM66-3:1
4.0 lnc-TMEM66-3:1
4.1 lnc-TMEM66-3:1
5.0 lnc-TMEM66-3:1
5.1 lnc-PURG-25:1
5.2 lnc-SARAF-3:1