Transcript: lnc-TMEM70-1:4

Basic information

LNCipedia transcript ID: lnc-TMEM70-1:4 
LNCipedia gene ID: lnc-TMEM70-1
Location (hg38): chr8:73880577-73884747
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 372 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00015306; NONHSAT127270
Alternative gene names: XLOC_006844; linc-TMEM70-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.8679 non-coding 
CPAT coding probability 4.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM70-1:4 no no no no

Available literature

  1. Shi (2015), Circulating lncRNAs associated with occurrence of colorectal cancer progression., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM70-1:3
3.1 lnc-TMEM70-1:4
4.0 lnc-TMEM70-1:4
4.1 lnc-TMEM70-1:4
5.0 lnc-TMEM70-1:4
5.1 lnc-SULF1-39:9
5.2 lnc-TMEM70-1:4